Publications – University of Copenhagen

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Publications

D.O.I. Title Authors Year of publication Journal volume Page numbers
10.1007/s00248-015-0576-9 Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs Peter Menzel, Sóley Ruth Gudbergsdóttir, Anne Gunn Rike, Lianbing Lin, Qi Zhang, Patrizia Contursi, Marco Moracci, Jakob K. Kristjansson, Benjamin Bolduc, Sergey Gavrilov, Nikolai Ravin, Andrey Mardanov, Elizaveta Bonch-Osmolovskaya, Mark Young, Anders Krogh, Xu Peng 25/02/2015 Microbial Ecology Advance online pub.
10.1007/s13213-013-0704-z Metagenomic analyses reveal phylogenetic diversity of carboxypeptidase gene sequences in activated sludge of a wastewater treatment plant in Shanghai, China Hao Jin, Bailin Li, Xu Peng, Lanming Chen

01/06/2014

Annals of Microbiology

Vol. 64/Issue  2

689-697
10.1128/JVI.01495-14 Unveiling Cell Surface and Type IV Secretion Proteins Responsible for Archaeal Rudivirus Entry L. Deng, F. He, Y. Bhoobalan-Chitty, L. Martinez-Alvarez, Y. Guo, X. Peng 01/09/2014

Journal of Virology

Vol. 88/Issue  17

10264-10268
10.1016/j.jmb.2014.09.016 First Experimental Evidence for the Presence of a CRISPR Toxin in Sulfolobus Fei He, Lanming Chen, Xu Peng 01/11/2014

Journal of Molecular Biology

Vol. 426/Issue  22

3683-3688
10.3389/fmicb.2012.00207 Diversity and subcellular distribution of archaeal secreted proteins Szabo Z 02/07/2012

Frontiers in Bioscience

3/2012

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10.1099/ijs.0.063156-0 Thermosipho activus sp. nov., a thermophilic, anaerobic, hydrolytic bacterium isolated from a deep-sea sample O. A. Podosokorskaya, E. A. Bonch-Osmolovskaya , A. Godfroy, S. N. Gavrilov, D. A. Beskorovaynaya, T. G. Sokolova , T. V. Kolganova, S. V. Toshchakov, I. V. Kublanov 01/09/2014

International Journal of Systematic and Evolutionary Microbiology

Vol. 64/Issue  Pt 9

3307-3313
10.1134/S0026261714060034 Capacity of hyperthermophilic Crenarchaeota for decomposition of refractory proteins (α- and β-keratins) S. Kh. Bidzhieva, K. S. Derbikova, I. V. Kublanov, E. A. Bonch-Osmolovskaya 01/11/2014

Microbiology (Mikrobiologiya)

Vol. 83/Issue  6

880-887
10.1099/ijs.0.000009 Thermogutta terrifontis gen. nov., sp. nov. and Thermogutta hypogea sp. nov., thermophilic anaerobic representatives of the phylum Planctomycetes G. B. Slobodkina, O. L. Kovaleva, M. L. Miroshnichenko, A. I. Slobodkin, T. V. Kolganova, A. A. Novikov, E. van Heerden, E. A. Bonch-Osmolovskaya 01/03/2015

International Journal of Systematic and Evolutionary Microbiology

Vol. 65/Issue  Pt 3

760-765
10.1099/ijs.0.070151-0 Tepidisphaera mucosa gen. nov., sp. nov., a moderately thermophilic member of the class Phycisphaerae in the phylum Planctomycetes, and proposal of a new family, Tepidisphaeraceae fam. nov., and a new order, Tepidisphaerales ord. nov. O. L. Kovaleva, A. Y. Merkel, A. A. Novikov, R. V. Baslerov, S. V. Toshchakov, E. A. Bonch-Osmolovskaya 01/02/2015

International Journal of Systematic and Evolutionary Microbiology

Vol. 65/Issue  Pt 2

549-555
10.1111/febs.12281 Reporter-based screening and selection of enzymes Teunke van Rossum, Servé W. M. Kengen, John van der Oost 01/07/2013

FEBS Journal

Vol. 280/Issue  13

549-555
10.1111/febs.13326 Structural studies of a thermophilic esterase from a new Planctomycetes species, Thermogutta terrifontis  Christopher Sayer, Michail N. Isupov, Elizaveta Bonch-Osmolovskaya, Jennifer A. Littlechild 01/06/2015

FEBS Journal

In press

n/a-n/a
10.1111/febs.13328 Discovery and characterization of thermophilic limonene-1,2-epoxide hydrolases from hot spring metagenomic libraries Erica Elisa Ferrandi, Christopher Sayer, Michail N. Isupov, Celeste Annovazzi, Carlotta Marchesi, Gianluca Iacobone, Xu Peng , Elizaveta Bonch-Osmolovskaya, Roland Wohlgemuth, Jennifer A. Littlechild, Daniela Monti 01/06/2015

FEBS Journal

In press

n/a-n/a
10.3389/fcell.2014.00070 Integrative workflows for metagenomic analysis Efthymios Ladoukakis, Fragiskos N. Kolisis, Aristotelis A. Chatziioannou 19/11/2014

Frontiers in Cell and Developmental Biology

Vol. 2

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10.1016/j.nbt.2014.05.2042 ANASTASIA a versatile web platform for metagenomic analysis Efthymios Ladoukakis, Eleftherios Pilalis, Aristotelis Chatziioannou, Fragiskos Kolisis 01/07/2014

New Biotechnology

Vol. 31

S170
10.1016/j.jbiotec.2014.04.026 Characterization of a phosphotriesterase-like lactonase from the hyperthermoacidophilic crenarchaeon Vulcanisaeta moutnovskia Verena Kallnik, Alina Bunescu, Christopher Sayer, Christopher Bräsen, Roland Wohlgemuth, Jennifer Littlechild, Bettina Siebers 01/11/2014

Journal of Biotechnology

Vol. 190

11-17
A Galaxy Workflow for the Functional Annotation of Metagenomic Samples Pilalis E. 01/01/2012

Lecture Notes in Computer Science

7297/ 2012

247-253
Economic transformation in Hungary and Poland Directorate-General for Economic and Financial Affairs 01/01/2000

EEAG Report on the European Economy

43/1990

151-167
10.1002/cctc.201500608 Efficient epoxide hydrolase catalyzed resolutions of
(+)- and (-)-cis/trans-limonene oxides
E. E. Ferrandi, C. Marchesi, C. Annovazzi, S. Riva, D.
Monti, R. Wohlgemuth
31/08/2015

ChemCatChem, 7

3171-3178
10.3389/fmicb.2015.01294 The Structure
of a Novel Thermophilic Esterase from the Planctomycetes Species, Thermogutta
terrifontis Reveals an Open Active Site Due to a Minimal ‘Cap’ Domain
Christopher Sayer, Zalan Szabo, Michail N. Isupov,
Colin Ingham and Jennifer A. Littlechild
23/11/2015 Frontiers in Microbiology -
http://dx.doi.org/10.1101/031229 Fast and sensitive taxonomic classification for
metagenomics
Peter Menzel, Kim Lee Ng, Anders Krogh. Kaiju 16/11/2015 BioRxiv. preprint. -
10.1111/1462-2920.13079 Novel viral genomes identified from six metagenomes
reveal wide distribution of archaeal viruses and high viral diversity in
terrestrial hot springs
Gudbergsdóttir SR, Menzel P, Krogh A, Young M, Peng X 06/10/2015 Environ Microbiol. -